Citation Policies
TBEV Analyzer should be referenced using the most recent one or more of the following citations:
Identifying New Clusterons: Application of TBEV Analyzer 3.0
Forghani, M., Kovalev, S., Khachay, M., Ramsay, E., Bolkov, M., & Vasev, P. (2023). Identifying New Clusterons: Application of TBEV Analyzer 3.0. Microorganisms, 11(2), 324.
DOI: doi.org/10.3390/microorganisms11020324
BibTeX:
Click here.
@article{forghani2023identifying,
title={Identifying New Clusterons: Application of TBEV Analyzer 3.0},
author={Forghani, Majid and Kovalev, Sergey and Khachay, Michael and Ramsay, Edward and Bolkov, Mikhail and Vasev, Pavel},
journal={Microorganisms},
volume={11},
number={2},
pages={324},
year={2023},
publisher={MDPI}
}
TBEV Analyzer Platform for Evolutionary Analysis and Monitoring Tick-borne Encephalitis Virus: 2020 Update
Forghani, M., Kovalev, S., Bolkov, M., Khachay, M., & Vasev, P. (2022). TBEV Analyzer Platform for Evolutionary Analysis and Monitoring Tick-borne Encephalitis Virus: 2020 Update. Biostatistics & Epidemiology, 6(1), 57-73.
DOI: 10.1080/24709360.2021.1985392
BibTeX:
Click here.
@article{forghani2022tbev,
title={TBEV analyzer platform for evolutionary analysis and monitoring tick-borne encephalitis virus: 2020 update},
author={Forghani, Majid and Kovalev, Sergey and Bolkov, Mikhail and Khachay, Michael and Vasev, Pavel},
journal={Biostatistics \& Epidemiology},
volume={6},
number={1},
pages={57--73},
year={2022},
publisher={Taylor \& Francis}
}
TBEV Analyzer: a Platform for Evolutionary Analysis of Tick-borne Encephalitis Virus
Forghani, M., Kovalev, S., Vasev, P., & Bolkov, M. (2019, October). TBEV Analyzer: a Platform for Evolutionary Analysis of Tick-borne Encephalitis Virus. In 2019 International Multi-Conference on Engineering, Computer and Information Sciences (SIBIRCON) (pp. 0397-0402). IEEE.
DOI: 10.1109/SIBIRCON48586.2019.8958021
BibTeX:
Click here.
@inproceedings{forghani2019tbev,
title={TBEV Analyzer: a Platform for Evolutionary Analysis of Tick-borne Encephalitis Virus},
author={Forghani, Majid and Kovalev, Sergey and Vasev, Pavel and Bolkov, Mikhail},
booktitle={2019 International Multi-Conference on Engineering, Computer and Information Sciences (SIBIRCON)},
pages={0397--0402},
year={2019},
organization={IEEE}
}
Bibliography of works that have employed or cited TBEV Analyzer:
Prevalence and genetic diversity of tick-borne encephalitis virus in ixodid ticks from specific regions of northwestern Russia.
Sharova A. A. et al. Prevalence and genetic diversity of tick-borne encephalitis virus in ixodid ticks from specific regions of northwestern Russia //PLoS One. – 2025. – Т. 20. – №. 1. – С. e0314385.
DOI: 10.1371/journal.pone.0314385
BibTeX:
Click here.
@article{sharova2025prevalence,
title={Prevalence and genetic diversity of tick-borne encephalitis virus in ixodid ticks from specific regions of northwestern Russia},
author={Sharova, Alena A and Tokarevich, Nikolay K and Baimova, Regina R and Freylikhman, Olga A and Karmokov, Islam A and Riabiko, Ekaterina G and Lunina, Gelena A and Buzinov, Roman V and Sokolova, Olga V and Buts, Lidia V and others},
journal={PLoS One},
volume={20},
number={1},
pages={e0314385},
year={2025},
publisher={Public Library of Science San Francisco, CA USA}
}
Whole-genome sequencing surveillance of Siberian tick-borne encephalitis virus (TBEV) identifies an additional lineage in Kyrgyzstan.
D'Addiego J. et al. Whole-genome sequencing surveillance of Siberian tick-borne encephalitis virus (TBEV) identifies an additional lineage in Kyrgyzstan //Virus research. – 2025. – Т. 351. – С. 199517
DOI: 10.1016/j.virusres.2024.199517
BibTeX:
Click here.
@article{d2025whole,
title={Whole-genome sequencing surveillance of Siberian tick-borne encephalitis virus (TBEV) identifies an additional lineage in Kyrgyzstan},
author={D'Addiego, Jake and Curran-French, Mollie and Smith, Jack and Junushov, Asankadyr T and Breininger, Irena and Atkinson, Barry and Hay, John and Hewson, Roger},
journal={Virus research},
volume={351},
pages={199517},
year={2025},
publisher={Elsevier}
}
Molecular detection and phylogenetic analysis of tick-borne encephalitis virus from ticks collected from cattle in Kyrgyzstan, 2023
Jung H. et al. Molecular detection and phylogenetic analysis of tick-borne encephalitis virus from ticks collected from cattle in Kyrgyzstan, 2023 //Viruses. – 2024. – Т. 16. – №. 1. – С. 107.
DOI: 10.3390/v16010107
BibTeX:
Click here.
@article{jung2024molecular,
title={Molecular detection and phylogenetic analysis of tick-borne encephalitis virus from ticks collected from cattle in Kyrgyzstan, 2023},
author={Jung, Haneul and Choi, Chi-Hwan and Lee, Minji and Kim, Seong-Yoon and Aknazarov, Bekbolsun and Nyrgaziev, Rysbek and Atabekova, Nurzina and Jetigenov, Elmurat and Chung, Yoon-Seok and Lee, Hee-Il},
journal={Viruses},
volume={16},
number={1},
pages={107},
year={2024},
publisher={MDPI}
}
European Subtype Tick-Borne Encephalitis Virus Emergence In South Korea (2005–2014) Can Be Associated With Human Activity
Kovalev S. Y. European Subtype Tick-Borne Encephalitis Virus Emergence In South Korea (2005–2014) Can Be Associated With Human Activity //bioRxiv. – 2024. – С. 2024.11. 29.626021.
DOI: 10.1101/2024.11.29.626021
BibTeX:
Click here.
@article{kovalev2024european,
title={European Subtype Tick-Borne Encephalitis Virus Emergence In South Korea (2005--2014) Can Be Associated With Human Activity},
author={Kovalev, Sergey Y},
journal={bioRxiv},
pages={2024--11},
year={2024},
publisher={Cold Spring Harbor Laboratory}
}
Phylogenetic analysis of tick-borne encephalitis virus strains found in an engorged tick and traveler returning from Russia
Yurchenko O. O. et al. Phylogenetic analysis of tick-borne encephalitis virus strains found in an engorged tick and traveler returning from Russia //Ticks and Tick-borne Diseases. – 2021. – Т. 12. – №. 3. – С. 101670.
DOI: 10.1016/j.ttbdis.2021.101670
BibTeX:
Click here.
@article{yurchenko2021phylogenetic,
title={Phylogenetic analysis of tick-borne encephalitis virus strains found in an engorged tick and traveler returning from Russia},
author={Yurchenko, Oksana O and Dubyna, Dmytro O and Vynograd, Nataliya O and Rogovskyy, Artem S},
journal={Ticks and Tick-borne Diseases},
volume={12},
number={3},
pages={101670},
year={2021},
publisher={Elsevier}
}
Fundamental Publications about Clusteron Structure
Reconsidering the classification of tick-borne encephalitis virus within the Siberian subtype gives new insights into its evolutionary history
Kovalev, S.Y., Mukhacheva, T.A. Reconsidering the classification of tick-borne encephalitis virus within the Siberian subtype gives new insights into its evolutionary history // Infection, Genetics and Evolution. – November 2017. – V.55. – p.159-165.
DOI: 10.1016/j.meegid.2017.09.014
BibTeX:
Click here.
@article{kovalev2017reconsidering,
title={Reconsidering the classification of tick-borne encephalitis virus within the Siberian subtype gives new insights into its evolutionary history},
author={Kovalev, SY and Mukhacheva, TA},
journal={Infection, Genetics and Evolution},
volume={55},
pages={159--165},
year={2017},
publisher={Elsevier}
}
Clusterons as a tool for monitoring populations of tick-borne encephalitis virus
Kovalev S.Y., Mukhacheva T.A. Clusterons as a tool for monitoring populations of tick-borne encephalitis virus // Journal of Medical Virology, 2014. – V.86(2). – p. 283-289.
DOI: 10.1002/jmv.23732
BibTeX:
Click here.
@article{kovalev2014clusterons,
title={Clusterons as a tool for monitoring populations of tick-borne encephalitis virus},
author={Kovalev, Sergey Y and Mukhacheva, Tatyana A},
journal={Journal of medical virology},
volume={86},
number={2},
pages={283--289},
year={2014},
publisher={Wiley Online Library}
}
Clusteron structure of tick-borne encephalitis virus populations
Kovalev S.Y., Mukhacheva T.A. Clusteron structure of tick-borne encephalitis virus populations // Infect Genet Evol. – 2013. – V.14(1). – p. 22-28.
DOI: 10.1016/j.meegid.2012.10.011
BibTeX:
Click here.
@article{kovalev2013clusteron,
title={Clusteron structure of tick-borne encephalitis virus populations},
author={Kovalev, Sergey Y and Mukhacheva, Tatyana A},
journal={Infection, genetics and Evolution},
volume={14},
pages={22--28},
year={2013},
publisher={Elsevier}
}
Other Publications
Baltic lineage of tick-borne encephalitis virus: A putative evolutionary pathway
Kovalev, S.Y., Mukhacheva, T.A. Baltic lineage of tick-borne encephalitis virus: A putative evolutionary pathway // Ticks and Tick-borne Diseases. – 2016. – V.7. – p. 1209-1215.
DOI: 10.1016/j.ttbdis.2016.07.013
BibTeX:
Click here.
@article{kovalev2016baltic,
title={Baltic lineage of tick-borne encephalitis virus: A putative evolutionary pathway},
author={Kovalev, SY and Mukhacheva, TA},
journal={Ticks and tick-borne diseases},
volume={7},
number={6},
pages={1209--1215},
year={2016},
publisher={Elsevier}
}
Unification of the molecular epidemiological research of the tick-borne encephalitis
Kovalev, S.Y., Mukhacheva, T.A. Unification of the molecular epidemiological research of the tick-borne encephalitis // Voprosy Virusologii, 2016, 61(2), pp. 89–95 (in Russian)
BibTeX:
Click here.
@article{kovalev2016unification,
title={Unification of the molecular epidemiological research of the tick-borne encephalitis},
author={Kovalev, SY and Mukhacheva, TA},
journal={Voprosy virusologii},
volume={61},
number={2},
pages={89--95},
year={2016}
}
Tick-borne encephalitis virus subtypes emerged through rapid vector switches rather than gradual evolution
Kovalev S.Y., Mukhacheva T.A. Tick-borne encephalitis virus subtypes emerged through rapid vector switches rather than gradual evolution // Ecology and Evolution – 2014. – V.4 (22). – p. 4307-4316.
DOI: 10.1002/ece3.1301
BibTeX:
Click here.
@article{kovalev2014tick,
title={Tick-borne encephalitis virus subtypes emerged through rapid vector switches rather than gradual evolution},
author={Kovalev, Sergey Y and Mukhacheva, Tatyana A},
journal={Ecology and evolution},
volume={4},
number={22},
pages={4307--4316},
year={2014},
publisher={Wiley Online Library}
}
Origin and distribution of tick-borne encephalitis virus strains of the Siberian subtype in the Middle Urals, the north-west of Russia and the Baltic countries
Kovalev S.Y., Chernykh D.N., Kokorev V.S., Snitkovskaya T.E. and Romanenko V.V. Origin and distribution of tick-borne encephalitis virus strains of the Siberian subtype in the Middle Urals, the north-west of Russia and the Baltic countries // Journal of General Virology. – 2009. – V. 90. – №12. – p. 2884-2892.
DOI: 10.1099/vir.0.012419-0
BibTeX:
Click here.
@article{kovalev2009origin,
title={Origin and distribution of tick-borne encephalitis virus strains of the Siberian subtype in the Middle Urals, the north-west of Russia and the Baltic countries},
author={Kovalev, S Yu and Chernykh, DN and Kokorev, VS and Snitkovskaya, TE and Romanenko, VV},
journal={Journal of general virology},
volume={90},
number={12},
pages={2884--2892},
year={2009},
publisher={Microbiology Society}
}